HL_6Z1P_031

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUAUAU

Length

7 nucleotides

Bulged bases

6Z1P|1|Ab|U|1241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_031 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.1913

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6Z1P|1|Ab|A|1237
6Z1P|1|Ab|G|1238
6Z1P|1|Ab|U|1239
6Z1P|1|Ab|A|1240
6Z1P|1|Ab|U|1241
6Z1P|1|Ab|A|1242
6Z1P|1|Ab|U|1243

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AB

Ribosomal protein L28

Chain Aa

LSU rRNA_1

Chain Ac

Ribosomal protein L2