HL_6Z1P_033

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAACACAAG

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|A|1376, 6Z1P|1|Ab|A|1378, 6Z1P|1|Ab|A|1380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_033 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3571

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Ab|C|1373
6Z1P|1|Ab|U|1374
6Z1P|1|Ab|A|1375
6Z1P|1|Ab|A|1376
6Z1P|1|Ab|C|1377
6Z1P|1|Ab|A|1378
6Z1P|1|Ab|C|1379
6Z1P|1|Ab|A|1380
6Z1P|1|Ab|A|1381
6Z1P|1|Ab|G|1382

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Aw

Ribosomal protein L22/L17e