HL_6Z1P_034

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAGAAUAUA

Length

9 nucleotides

Bulged bases

6Z1P|1|Ab|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_034 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.275

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6Z1P|1|Ab|U|1391
6Z1P|1|Ab|A|1392
6Z1P|1|Ab|G|1393
6Z1P|1|Ab|A|1394
6Z1P|1|Ab|A|1395
6Z1P|1|Ab|U|1396
6Z1P|1|Ab|A|1397
6Z1P|1|Ab|U|1398
6Z1P|1|Ab|A|1399

Current chains

Chain Ab

LSU rRNA_2

Nearby chains