HL_6Z1P_037

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUUAAUAAAAAC

Length

13 nucleotides

Bulged bases

6Z1P|1|Ab|A|1507, 6Z1P|1|Ab|A|1508, 6Z1P|1|Ab|U|1509, 6Z1P|1|Ab|A|1513

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_037 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.1746

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6Z1P|1|Ab|G|1503
6Z1P|1|Ab|U|1504
6Z1P|1|Ab|U|1505
6Z1P|1|Ab|U|1506
6Z1P|1|Ab|A|1507
6Z1P|1|Ab|A|1508
6Z1P|1|Ab|U|1509
6Z1P|1|Ab|A|1510
6Z1P|1|Ab|A|1511
6Z1P|1|Ab|A|1512
6Z1P|1|Ab|A|1513
6Z1P|1|Ab|A|1514
6Z1P|1|Ab|C|1515

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain Ac

Ribosomal protein L2

Chain Aw

Ribosomal protein L22/L17e