HL_6Z1P_040
3D structure
- PDB id
- 6Z1P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mitochondrial ribosome from Tetrahymena thermophila
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUAACCCUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6Z1P|1|Ab|A|1632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z1P_040 not in the Motif Atlas
- Homologous match to HL_9DFE_046
- Geometric discrepancy: 0.5268
- The information below is about HL_9DFE_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Z1P|1|Ab|G|1629
6Z1P|1|Ab|U|1630
6Z1P|1|Ab|A|1631
6Z1P|1|Ab|A|1632
6Z1P|1|Ab|C|1633
6Z1P|1|Ab|C|1634
6Z1P|1|Ab|C|1635
6Z1P|1|Ab|U|1636
6Z1P|1|Ab|G|1637
6Z1P|1|Ab|A|1638
6Z1P|1|Ab|C|1639
Current chains
- Chain Ab
- LSU rRNA_2
Nearby chains
- Chain Bb
- Small subunit ribosomal RNA; SSU rRNA
- Chain Bl
- Ribosomal protein S12
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