HL_6Z1P_046

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAAAGUAACG

Length

13 nucleotides

Bulged bases

6Z1P|1|Ab|A|1962, 6Z1P|1|Ab|C|1969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_046 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1509

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|C|1958
6Z1P|1|Ab|U|1959
6Z1P|1|Ab|A|1960
6Z1P|1|Ab|A|1961
6Z1P|1|Ab|A|1962
6Z1P|1|Ab|A|1963
6Z1P|1|Ab|A|1964
6Z1P|1|Ab|G|1965
6Z1P|1|Ab|U|1966
6Z1P|1|Ab|A|1967
6Z1P|1|Ab|A|1968
6Z1P|1|Ab|C|1969
6Z1P|1|Ab|G|1970

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AA

50S ribosomal protein L27

Chain Ar

Ribosomal protein L16