HL_6Z1P_051

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAGUAGAAA

Length

10 nucleotides

Bulged bases

6Z1P|1|Ab|U|2099, 6Z1P|1|Ab|A|2100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_051 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3173

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Ab|U|2098
6Z1P|1|Ab|U|2099
6Z1P|1|Ab|A|2100
6Z1P|1|Ab|G|2101
6Z1P|1|Ab|U|2102
6Z1P|1|Ab|A|2103
6Z1P|1|Ab|G|2104
6Z1P|1|Ab|A|2105
6Z1P|1|Ab|A|2106
6Z1P|1|Ab|A|2107

Current chains

Chain Ab

LSU rRNA_2

Nearby chains

Chain AO

mL64

Chain Aa

LSU rRNA_1

Chain Aq

Ribosomal protein L15, putative