HL_6Z1P_071

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUGAG

Length

8 nucleotides

Bulged bases

6Z1P|1|Bb|A|473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_071 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.3381

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Bb|C|471
6Z1P|1|Bb|A|472
6Z1P|1|Bb|A|473
6Z1P|1|Bb|A|474
6Z1P|1|Bb|U|475
6Z1P|1|Bb|G|476
6Z1P|1|Bb|A|477
6Z1P|1|Bb|G|478

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BD

IGR motif protein

Chain BE

mS45

Chain BI

Enoyl-CoA hydratase/isomerase

Chain Bp

30S ribosomal protein S16