HL_6Z1P_074

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUUAAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_074 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.1883

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6Z1P|1|Bb|C|679
6Z1P|1|Bb|G|680
6Z1P|1|Bb|A|681
6Z1P|1|Bb|U|682
6Z1P|1|Bb|U|683
6Z1P|1|Bb|A|684
6Z1P|1|Bb|A|685
6Z1P|1|Bb|A|686
6Z1P|1|Bb|U|687
6Z1P|1|Bb|G|688

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bk

Ymf61

Chain Bt

bS21m