HL_6Z1P_078

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_078 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.1582

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Z1P|1|Bb|C|842
6Z1P|1|Bb|U|843
6Z1P|1|Bb|A|844
6Z1P|1|Bb|A|845
6Z1P|1|Bb|C|846
6Z1P|1|Bb|G|847

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BB

mS37

Chain Ba

SSU rRNA_1

Chain Bf

30S ribosomal protein S5