HL_6Z1P_080

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUAAUCCAC

Length

10 nucleotides

Bulged bases

6Z1P|1|Bb|A|949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_080 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.3329

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z1P|1|Bb|G|941
6Z1P|1|Bb|A|942
6Z1P|1|Bb|U|943
6Z1P|1|Bb|A|944
6Z1P|1|Bb|A|945
6Z1P|1|Bb|U|946
6Z1P|1|Bb|C|947
6Z1P|1|Bb|C|948
6Z1P|1|Bb|A|949
6Z1P|1|Bb|C|950

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain Bi

Ribosomal protein S9

Chain Bj

Ymf59

Chain Bm

Ribosomal protein S13