HL_6Z1P_082

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_082 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1337

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6Z1P|1|Bb|U|1049
6Z1P|1|Bb|G|1050
6Z1P|1|Bb|U|1051
6Z1P|1|Bb|G|1052
6Z1P|1|Bb|A|1053
6Z1P|1|Bb|A|1054

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BB

mS37

Chain Ba

SSU rRNA_1

Chain Bc

Ymf73

Chain Bf

30S ribosomal protein S5

Chain Bu

mS23