HL_6Z1P_086

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_086 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1433

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6Z1P|1|Bb|A|1277
6Z1P|1|Bb|G|1278
6Z1P|1|Bb|U|1279
6Z1P|1|Bb|A|1280
6Z1P|1|Bb|A|1281
6Z1P|1|Bb|U|1282

Current chains

Chain Bb

SSU rRNA_2

Nearby chains

Chain BA

Ribosomal subunit protein

Chain BF

mS75

Chain Bm

Ribosomal protein S13

Chain Bs

Ribosomal protein S19

Chain Bw

Ribosomal death-associated protein

Chain Bx

mS31

Chain By

mS33