HL_6Z1P_089

3D structure

PDB id

6Z1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mitochondrial ribosome from Tetrahymena thermophila

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAUUUUUA

Length

9 nucleotides

Bulged bases

6Z1P|1|Bb|U|1479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z1P_089 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3245

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z1P|1|Bb|U|1475
6Z1P|1|Bb|U|1476
6Z1P|1|Bb|A|1477
6Z1P|1|Bb|U|1478
6Z1P|1|Bb|U|1479
6Z1P|1|Bb|U|1480
6Z1P|1|Bb|U|1481
6Z1P|1|Bb|U|1482
6Z1P|1|Bb|A|1483

Current chains

Chain Bb

SSU rRNA_2

Nearby chains