HL_6Z6J_006

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

6Z6J|1|C1|U|210, 6Z6J|1|C1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_006 not in the Motif Atlas

Homologous match to HL_8C3A_006

Geometric discrepancy: 0.0968

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Z6J|1|C1|C|208
6Z6J|1|C1|A|209
6Z6J|1|C1|U|210
6Z6J|1|C1|A|211
6Z6J|1|C1|G|212

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A