HL_6Z6J_021

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6Z6J|1|C1|A|913, 6Z6J|1|C1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_021 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1008

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6J|1|C1|G|910
6Z6J|1|C1|C|911
6Z6J|1|C1|G|912
6Z6J|1|C1|A|913
6Z6J|1|C1|A|914
6Z6J|1|C1|A|915
6Z6J|1|C1|G|916
6Z6J|1|C1|A|917
6Z6J|1|C1|C|918

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-A

Chain LN

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L37-A