HL_6Z6J_043

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6Z6J|1|C1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.146

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6Z6J|1|C1|C|1923
6Z6J|1|C1|U|1924
6Z6J|1|C1|U|1925
6Z6J|1|C1|C|1926
6Z6J|1|C1|G|1927
6Z6J|1|C1|G|1928

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

60S ribosomal protein L41-B

Chain Lp

60S ribosomal protein L43-A