HL_6Z6J_074

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAUACAG

Length

9 nucleotides

Bulged bases

6Z6J|1|C2|U|77

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_074 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1238

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Z6J|1|C2|C|70
6Z6J|1|C2|A|71
6Z6J|1|C2|A|72
6Z6J|1|C2|A|76
6Z6J|1|C2|U|77
6Z6J|1|C2|A|78
6Z6J|1|C2|C|79
6Z6J|1|C2|A|80
6Z6J|1|C2|G|81

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A