HL_6Z6J_084

3D structure

PDB id

6Z6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6Z6J|1|C2|U|454, 6Z6J|1|C2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6J_084 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.18

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6J|1|C2|U|450
6Z6J|1|C2|A|451
6Z6J|1|C2|A|452
6Z6J|1|C2|U|453
6Z6J|1|C2|U|454
6Z6J|1|C2|C|455
6Z6J|1|C2|A|456

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SY

40S ribosomal protein S24-A