HL_6Z6J_113
3D structure
- PDB id
- 6Z6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUGAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6J_113 not in the Motif Atlas
- Homologous match to HL_5TBW_186
- Geometric discrepancy: 0.1598
- The information below is about HL_5TBW_186
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6Z6J|1|C4|G|88
6Z6J|1|C4|G|89
6Z6J|1|C4|U|90
6Z6J|1|C4|G|91
6Z6J|1|C4|A|92
6Z6J|1|C4|C|93
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein L7-A
- Chain LI
- 60S ribosomal protein L10
- Chain LS
- 60S ribosomal protein L20-A
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