HL_6Z6K_014

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6Z6K|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1015

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6Z6K|1|C1|U|640
6Z6K|1|C1|C|641
6Z6K|1|C1|U|642
6Z6K|1|C1|U|643
6Z6K|1|C1|G|644
6Z6K|1|C1|A|645
6Z6K|1|C1|A|646
6Z6K|1|C1|A|647
6Z6K|1|C1|C|648
6Z6K|1|C1|A|649

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain La

60S ribosomal protein L28

Chain Le

60S ribosomal protein L32