HL_6Z6K_039

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_039 not in the Motif Atlas

Homologous match to HL_5TBW_039

Geometric discrepancy: 0.4543

The information below is about HL_5TBW_039

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_61202.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6Z6K|1|C1|A|1760
6Z6K|1|C1|C|1761
6Z6K|1|C1|C|1762
6Z6K|1|C1|U|1763
6Z6K|1|C1|U|1764
6Z6K|1|C1|U|1765

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LX

60S ribosomal protein L25