HL_6Z6K_049

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6Z6K|1|C1|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_049 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1334

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6K|1|C1|G|2253
6Z6K|1|C1|U|2254
6Z6K|1|C1|A|2255
6Z6K|1|C1|A|2256
6Z6K|1|C1|C|2257
6Z6K|1|C1|U|2258
6Z6K|1|C1|A|2259
6Z6K|1|C1|U|2260
6Z6K|1|C1|G|2261
6Z6K|1|C1|A|2262
6Z6K|1|C1|C|2263

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Se

40S ribosomal protein S30-A