HL_6Z6K_062

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6Z6K|1|C1|U|2842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2171

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6K|1|C1|C|2840
6Z6K|1|C1|G|2841
6Z6K|1|C1|U|2842
6Z6K|1|C1|U|2843
6Z6K|1|C1|C|2844
6Z6K|1|C1|A|2845
6Z6K|1|C1|U|2846
6Z6K|1|C1|A|2847
6Z6K|1|C1|G|2848

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-60S ribosomal protein L40