HL_6Z6K_063

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6Z6K|1|C1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_063 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1412

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6Z6K|1|C1|A|2897
6Z6K|1|C1|G|2898
6Z6K|1|C1|C|2899
6Z6K|1|C1|A|2900
6Z6K|1|C1|G|2901
6Z6K|1|C1|A|2902
6Z6K|1|C1|A|2903
6Z6K|1|C1|U|2904

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain Lm

Ubiquitin-60S ribosomal protein L40