HL_6Z6K_067

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_067 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.1887

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6Z6K|1|C1|U|3068
6Z6K|1|C1|G|3069
6Z6K|1|C1|A|3070
6Z6K|1|C1|U|3071
6Z6K|1|C1|C|3072
6Z6K|1|C1|A|3073

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19-A

Chain LU

60S ribosomal protein L22-A

Chain Ld

60S ribosomal protein L31-A