HL_6Z6K_092

3D structure

PDB id

6Z6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6K_092 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1434

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6Z6K|1|C2|A|900
6Z6K|1|C2|G|901
6Z6K|1|C2|G|902
6Z6K|1|C2|U|903
6Z6K|1|C2|G|904
6Z6K|1|C2|A|905
6Z6K|1|C2|A|906
6Z6K|1|C2|A|907
6Z6K|1|C2|U|908
6Z6K|1|C2|U|909

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Rps5p

Chain SO

40S ribosomal protein S14-A

Chain Sa

40S ribosomal protein S26-B

Chain Sc

40S ribosomal protein S28-A