HL_6Z6K_094
3D structure
- PDB id
- 6Z6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6Z6K|1|C2|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6K_094 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.142
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
6Z6K|1|C2|G|997
6Z6K|1|C2|A|998
6Z6K|1|C2|U|999
6Z6K|1|C2|C|1000
6Z6K|1|C2|A|1001
6Z6K|1|C2|G|1002
6Z6K|1|C2|A|1003
6Z6K|1|C2|U|1004
6Z6K|1|C2|A|1005
6Z6K|1|C2|C|1006
6Z6K|1|C2|C|1007
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C5
- Protein LSO2
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sa
- 40S ribosomal protein S26-B
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