HL_6Z6L_025

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_025 not in the Motif Atlas

Homologous match to HL_8C3A_019

Geometric discrepancy: 0.1001

The information below is about HL_8C3A_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Z6L|1|L5|G|1561
6Z6L|1|L5|G|1562
6Z6L|1|L5|A|1563
6Z6L|1|L5|A|1564
6Z6L|1|L5|A|1565
6Z6L|1|L5|C|1566

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13