HL_6Z6L_027

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6Z6L|1|L5|A|1630, 6Z6L|1|L5|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_027 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.098

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Z6L|1|L5|G|1627
6Z6L|1|L5|C|1628
6Z6L|1|L5|G|1629
6Z6L|1|L5|A|1630
6Z6L|1|L5|A|1631
6Z6L|1|L5|A|1632
6Z6L|1|L5|G|1633
6Z6L|1|L5|A|1634
6Z6L|1|L5|C|1635

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37