HL_6Z6L_083

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

6Z6L|1|L8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_083 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.172

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6Z6L|1|L8|C|107
6Z6L|1|L8|A|108
6Z6L|1|L8|C|109
6Z6L|1|L8|U|110
6Z6L|1|L8|U|111
6Z6L|1|L8|G|112

Current chains

Chain L8

5.8S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39