HL_6Z6L_106

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_106 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.3995

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6Z6L|1|S2|A|1113
6Z6L|1|S2|U|1114
6Z6L|1|S2|U|1115
6Z6L|1|S2|C|1116
6Z6L|1|S2|C|1117
6Z6L|1|S2|C|1118
6Z6L|1|S2|A|1119
6Z6L|1|S2|U|1120

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain Sb

40S ribosomal protein S27