HL_6Z6L_118

3D structure

PDB id

6Z6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human CCDC124 bound to 80S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUGCGCCCACGG*C

Length

14 nucleotides

Bulged bases

6Z6L|1|S2|G|1764, 6Z6L|1|S2|C|1765, 6Z6L|1|S2|C|1766, 6Z6L|1|S2|C|1767, 6Z6L|1|S2|A|1768, 6Z6L|1|S2|C|1769, 6Z6L|1|S2|G|1770, 6Z6L|1|S2|G|1771

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6L_118 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3071

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Z6L|1|S2|G|1759
6Z6L|1|S2|G|1760
6Z6L|1|S2|U|1761
6Z6L|1|S2|G|1771
6Z6L|1|S2|C|1772
6Z6L|1|S2|G|1764
6Z6L|1|S2|C|1765
6Z6L|1|S2|C|1766
6Z6L|1|S2|C|1767
6Z6L|1|S2|A|1768
6Z6L|1|S2|C|1769
6Z6L|1|S2|G|1770
6Z6L|1|S2|G|1771
*
6Z6L|1|S2|C|1772

Current chains

Chain S2

18S rRNA

Nearby chains