HL_6Z6M_009

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

6Z6M|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_009 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.3006

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6Z6M|1|L5|U|204
6Z6M|1|L5|C|205
6Z6M|1|L5|U|206
6Z6M|1|L5|G|207
6Z6M|1|L5|A|208
6Z6M|1|L5|U|209
6Z6M|1|L5|C|210
6Z6M|1|L5|G|211

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32