HL_6Z6M_013
3D structure
- PDB id
- 6Z6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAACUCC
- Length
- 10 nucleotides
- Bulged bases
- 6Z6M|1|L5|G|315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Z6M_013 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.2619
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6Z6M|1|L5|G|314
6Z6M|1|L5|G|315
6Z6M|1|L5|U|316
6Z6M|1|L5|A|317
6Z6M|1|L5|A|318
6Z6M|1|L5|A|319
6Z6M|1|L5|C|320
6Z6M|1|L5|U|321
6Z6M|1|L5|C|322
6Z6M|1|L5|C|323
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LN
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein L27a
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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