HL_6Z6M_030

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGCCGAAACGAUCU

Length

15 nucleotides

Bulged bases

6Z6M|1|L5|C|1763, 6Z6M|1|L5|A|1765, 6Z6M|1|L5|A|1766, 6Z6M|1|L5|A|1767

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_030 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.293

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Z6M|1|L5|G|1759
6Z6M|1|L5|G|1760
6Z6M|1|L5|G|1761
6Z6M|1|L5|C|1762
6Z6M|1|L5|C|1763
6Z6M|1|L5|G|1764
6Z6M|1|L5|A|1765
6Z6M|1|L5|A|1766
6Z6M|1|L5|A|1767
6Z6M|1|L5|C|1768
6Z6M|1|L5|G|1769
6Z6M|1|L5|A|1770
6Z6M|1|L5|U|1771
6Z6M|1|L5|C|1772
6Z6M|1|L5|U|1773

Current chains

Chain L5

28S rRNA

Nearby chains