HL_6Z6M_057

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6Z6M|1|L5|A|3760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_057 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1515

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6M|1|L5|G|3757
6Z6M|1|L5|U|3758
6Z6M|1|L5|A|3759
6Z6M|1|L5|A|3760
6Z6M|1|L5|C|3761
6Z6M|1|L5|U|3762
6Z6M|1|L5|A|3763
6Z6M|1|L5|U|3764
6Z6M|1|L5|G|3765
6Z6M|1|L5|A|3766
6Z6M|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain S2

Small subunit ribosomal RNA; SSU rRNA