HL_6Z6M_072

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6Z6M|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_072 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.0841

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6Z6M|1|L5|A|4474
6Z6M|1|L5|G|4475
6Z6M|1|L5|C|4476
6Z6M|1|L5|A|4477
6Z6M|1|L5|G|4478
6Z6M|1|L5|A|4479
6Z6M|1|L5|A|4480
6Z6M|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40