HL_6Z6M_081

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_081 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.35

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6Z6M|1|L5|C|5021
6Z6M|1|L5|U|5022
6Z6M|1|L5|C|5023
6Z6M|1|L5|C|5024
6Z6M|1|L5|C|5025
6Z6M|1|L5|U|5026
6Z6M|1|L5|C|5027
6Z6M|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8