HL_6Z6M_098

3D structure

PDB id

6Z6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosomes bound to EBP1, eEF2 and SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

6Z6M|1|S2|A|500, 6Z6M|1|S2|C|502, 6Z6M|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6M_098 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2899

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Z6M|1|S2|C|498
6Z6M|1|S2|G|499
6Z6M|1|S2|A|500
6Z6M|1|S2|C|501
6Z6M|1|S2|C|502
6Z6M|1|S2|C|503
6Z6M|1|S2|G|504

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24