HL_6Z6N_001

3D structure

PDB id

6Z6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAACGGCUAUC

Length

12 nucleotides

Bulged bases

6Z6N|1|CC|C|16, 6Z6N|1|CC|G|17, 6Z6N|1|CC|G|18, 6Z6N|1|CC|C|19, 6Z6N|1|CC|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Z6N_001 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.2907

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

6Z6N|1|CC|G|12
6Z6N|1|CC|U|13
6Z6N|1|CC|A|14
6Z6N|1|CC|A|15
6Z6N|1|CC|C|16
6Z6N|1|CC|G|17
6Z6N|1|CC|G|18
6Z6N|1|CC|C|19
6Z6N|1|CC|U|20
6Z6N|1|CC|A|21
6Z6N|1|CC|U|22
6Z6N|1|CC|C|23

Current chains

Chain CC

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Lz

60S ribosomal protein L10a

Chain SO

40S ribosomal protein S14