3D structure

PDB id
6ZCE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast ABCE1-bound 43S pre-initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ZCE_013 not in the Motif Atlas
Homologous match to HL_4V88_199
Geometric discrepancy: 0.1111
The information below is about HL_4V88_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.1
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6ZCE|1|A|A|520
6ZCE|1|A|A|521
6ZCE|1|A|U|522
6ZCE|1|A|G|523
6ZCE|1|A|U|524
6ZCE|1|A|A|525
6ZCE|1|A|A|526
6ZCE|1|A|A|527
6ZCE|1|A|U|528
6ZCE|1|A|A|529
6ZCE|1|A|C|530
6ZCE|1|A|C|531
6ZCE|1|A|U|532

Current chains

Chain A
18S ribosomal RNA (1719-MER)

Nearby chains

Chain K
40S ribosomal protein S9-A
Chain Z
40S ribosomal protein S24-A

Coloring options:


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