RNA 3D Hub //

6ZCE Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6ZCE_0011/A/7:17No text annotation
homologous
HL_4V88_186
NA
HL_6ZCE_0021/A/70:81No text annotation
HL_6ZCE_0031/A/154:160GNRA related
homologous
HL_4V88_188
NA
HL_6ZCE_0041/A/190:195No text annotation
HL_6ZCE_0051/A/243:250T-loop with 1 bulged base
homologous
HL_4V88_191
NA
HL_6ZCE_0061/A/276:279Mini UNCG
homologous
HL_4V88_192
NA
HL_6ZCE_0071/A/330:338GNRA related
homologous
HL_4V88_193
NA
HL_6ZCE_0081/A/368:373No text annotation
homologous
HL_4V88_194
NA
HL_6ZCE_0091/A/393:404No text annotation
homologous
HL_4V88_195
NA
HL_6ZCE_0101/A/414:419UNCG
homologous
HL_4V88_196
NA
HL_6ZCE_0111/A/450:456No text annotation
homologous
HL_4V88_197
NA
HL_6ZCE_0121/A/491:496No text annotation
homologous
HL_4V88_198
NA
HL_6ZCE_0131/A/520:532No text annotation
homologous
HL_4V88_199
NA
HL_6ZCE_0141/A/569:574GNRA variation
homologous
HL_4V88_200
NA
HL_6ZCE_0161/A/764:772No text annotation
homologous
HL_4V88_203
NA
HL_6ZCE_0171/A/777:783No text annotation
homologous
HL_4V88_204
NA
HL_6ZCE_0181/A/829:843Pseudoknot geometry
homologous
HL_4V88_205
NA
HL_6ZCE_0191/A/900:909No text annotation
homologous
HL_4V88_206
NA
HL_6ZCE_0201/A/937:942GNRA
homologous
HL_4V88_207
NA
HL_6ZCE_0211/A/997:1007No text annotation
homologous
HL_4V88_208
NA
HL_6ZCE_0221/A/1055:1064No text annotation
HL_6ZCE_0231/A/1084:1089GNRA
homologous
HL_4V88_210
NA
HL_6ZCE_0241/A/1121:1126GNRA
homologous
HL_4V88_211
NA
HL_6ZCE_0251/A/1188:1197No text annotation
homologous
HL_4V88_212
NA
HL_6ZCE_0261/A/1238:1247Anticodon loop related
homologous
HL_4V88_213
NA
HL_6ZCE_0271/A/1296:1301GNRA
homologous
HL_4V88_214
NA
HL_6ZCE_0281/A/1309:1316No text annotation
homologous
HL_4V88_215
NA
HL_6ZCE_0291/A/1359:1364No text annotation
HL_6ZCE_0301/A/1396:1402GNRA
homologous
HL_4V88_217
NA
HL_6ZCE_0311/A/1501:1506GNRA
homologous
HL_4V88_218
NA
HL_6ZCE_0321/A/1550:1561No text annotation
homologous
HL_4V88_219
NA
HL_6ZCE_0331/A/1594:1602No text annotation
homologous
HL_4V88_220
NA
HL_6ZCE_0351/A/1778:1783GNRA variation
homologous
HL_4V88_222
NA

Problematic loops

#loop idProblemSequence
HL_6ZCE_036No text annotation
HL_6ZCE_015No text annotation
HL_6ZCE_037No text annotation
HL_6ZCE_034No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6ZCE_0011/A/24:26,
1/A/600:601		Single bulged C
homologous
IL_4V88_384
NA
IL_6ZCE_0021/A/35:37,
1/A/471:473		Isolated non-canonical cWW pair
geometric
IL_4V88_385
NA
IL_6ZCE_0031/A/37:41,
1/A/466:471		Triple sheared related
homologous
IL_4V88_386
NA
IL_6ZCE_0041/A/42:48,
1/A/431:433		No text annotation
homologous
IL_4V88_387
NA
IL_6ZCE_0051/A/50:52,
1/A/428:429		Minor groove platform
homologous
IL_4V88_388
NA
IL_6ZCE_0061/A/58:63,
1/A/87:89		No text annotation
homologous
IL_4V88_389
NA
IL_6ZCE_0071/A/64:69,
1/A/82:86		No text annotation
homologous
IL_4V88_390
NA
IL_6ZCE_0081/A/109:112,
1/A/302:305		Tandem non-canonical cWW pairs
homologous
IL_4V88_391
NA
IL_6ZCE_0091/A/113:116,
1/A/300:301		Multiple bulged bases
homologous
IL_4V88_392
NA
IL_6ZCE_0101/A/117:122,
1/A/295:299		No text annotation
homologous
IL_4V88_393
NA
IL_6ZCE_0111/A/143:149,
1/A/165:172		tWH-tWH-tHW-tHW
homologous
IL_4V88_394
NA
IL_6ZCE_0121/A/150:152,
1/A/162:164		Isolated cWH basepair
geometric
IL_3W3S_003
IL_10167.6
IL_6ZCE_0131/A/186:189,
1/A/196:199		Double sheared
homologous
IL_4V88_396
NA
IL_6ZCE_0141/A/204:206,
1/A/259:263		Major groove platform with extra cWW
homologous
IL_4V88_397
NA
IL_6ZCE_0151/A/206:208,
1/A/257:259		Isolated non-canonical cWW pair
geometric
IL_3TD0_001
IL_28037.2
IL_6ZCE_0171/A/265:267,
1/A/288:289		Single bulged A
homologous
IL_4V88_399
NA
IL_6ZCE_0181/A/270:273,
1/A/283:285		No text annotation
homologous
IL_4V88_400
NA
IL_6ZCE_0191/A/275:276,
1/A/279:281		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6ZCE_0201/A/311:316,
1/A/348:355		Kink-turn with non-sequential stacking
homologous
IL_4V88_402
NA
IL_6ZCE_0211/A/318:323,
1/A/345:346		No text annotation
geometric
IL_5Y58_001
IL_59877.1
IL_6ZCE_0221/A/363:365,
1/A/376:381		No text annotation
homologous
IL_4V88_404
NA
IL_6ZCE_0231/A/389:391,
1/A/406:408		Isolated cWH basepair
homologous
IL_4V88_405
NA
IL_6ZCE_0241/A/411:413,
1/A/420:422		Isolated near basepair
homologous
IL_4V88_406
NA
IL_6ZCE_0251/A/439:441,
1/A/463:464		Single bulged U
homologous
IL_4V88_407
NA
IL_6ZCE_0261/A/443:447,
1/A/460:461		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6ZCE_0271/A/447:448,
1/A/458:460		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6ZCE_1021/A/480:482,
1/A/505:508		Isolated cWH basepair
geometric
IL_4KQ0_002
IL_10167.6
IL_6ZCE_0291/A/517:518,
1/A/533:535		Minor groove platform
geometric
IL_4LFB_054
IL_51454.3
IL_6ZCE_0301/A/518:520,
1/A/532:533		Minor groove platform
geometric
IL_4V88_412
NA
IL_6ZCE_0311/A/550:557,
1/A/587:588		SSU/LSU pseudoknot
geometric
IL_4V88_413
NA
IL_6ZCE_0321/A/557:559,
1/A/586:587		Single bulged U
homologous
IL_4V88_414
NA
IL_6ZCE_0331/A/562:568,
1/A/575:583		Kink-turn related
homologous
IL_4V88_415
NA
IL_6ZCE_0341/A/616:622,
1/A/1104:1105		No text annotation
homologous
IL_4V88_416
NA
IL_6ZCE_0351/A/624:626,
1/A/973:975		Isolated non-canonical cWW pair
homologous
IL_4V88_417
NA
IL_6ZCE_0361/A/627:632,
1/A/967:972		No text annotation
geometric
IL_8ZA4_001
IL_76308.6
IL_6ZCE_1031/A/646:648,
1/A/686:688		No text annotation
homologous
IL_8P9A_408
IL_44465.1
IL_6ZCE_0381/A/652:654,
1/A/676:682		No text annotation
IL_6ZCE_0391/A/656:659,
1/A/669:674		No text annotation
IL_6ZCE_0401/A/746:747,
1/A/802:805		Major groove minor groove platform; mini C-loop
homologous
IL_4V88_423
NA
IL_6ZCE_0411/A/748:750,
1/A/799:801		Isolated non-canonical cWW pair
homologous
IL_4V88_424
NA
IL_6ZCE_0421/A/751:759,
1/A/791:798		No text annotation
homologous
IL_4V88_425
NA
IL_6ZCE_0431/A/817:822,
1/A/850:854		No text annotation
IL_6ZCE_0441/A/865:866,
1/A/962:965		Major groove platform; stack outside cWW
geometric
IL_6N5P_003
IL_50694.7
IL_6ZCE_0451/A/868:870,
1/A/957:960		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_6ZCE_0941/A/871:873,
1/A/954:956		Isolated non-canonical cWW pair
geometric
IL_8C3A_074
NA
IL_6ZCE_0471/A/874:878,
1/A/950:953		Tandem non-canonical cWW pairs
homologous
IL_4V88_431
NA
IL_6ZCE_0481/A/885:888,
1/A/924:927		Tandem non-canonical cWW pairs
homologous
IL_4V88_432
NA
IL_6ZCE_0491/A/893:899,
1/A/910:919		No text annotation
IL_6ZCE_0501/A/985:990,
1/A/1014:1016		Other IL
homologous
IL_4V88_435
NA
IL_6ZCE_0511/A/990:994,
1/A/1010:1014		tSH-tHW-tHS
geometric
IL_4V88_436
NA
IL_6ZCE_1041/A/1034:1036,
1/A/1095:1101		No text annotation
homologous
IL_8P9A_425
IL_82706.1
IL_6ZCE_0531/A/1041:1044,
1/A/1074:1077		Tandem non-canonical cWW pairs
homologous
IL_4V88_438
NA
IL_6ZCE_0541/A/1051:1053,
1/A/1066:1067		Single bulged U
homologous
IL_4V88_439
NA
IL_6ZCE_0551/A/1111:1118,
1/A/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4V88_440
NA
IL_6ZCE_0561/A/1146:1147,
1/A/1630:1632		Single bulged A
homologous
IL_4V88_441
NA
IL_6ZCE_0571/A/1149:1151,
1/A/1627:1628		Single bulged G
homologous
IL_4V88_442
NA
IL_6ZCE_0581/A/1157:1160,
1/A/1617:1621		C-loop
homologous
IL_4V88_443
NA
IL_6ZCE_0591/A/1173:1175,
1/A/1464:1466		Isolated non-canonical cWW pair
homologous
IL_4V88_444
NA
IL_6ZCE_0601/A/1178:1179,
1/A/1459:1461		Minor groove platform
homologous
IL_4V88_445
NA
IL_6ZCE_0611/A/1213:1215,
1/A/1448:1450		Isolated non-canonical cWW pair
homologous
IL_4V88_446
NA
IL_6ZCE_0621/A/1224:1230,
1/A/1257:1259		No text annotation
IL_6ZCE_1051/A/1224:1233,
1/A/1252:1259		No text annotation
homologous
IL_8P9A_470
IL_28304.1
IL_6ZCE_0631/A/1230:1233,
1/A/1252:1257		No text annotation
IL_6ZCE_0641/A/1234:1236,
1/A/1249:1251		No text annotation
homologous
IL_4V88_448
NA
IL_6ZCE_0651/A/1268:1270,
1/A/1440:1441		Single bulged U
homologous
IL_4V88_449
NA
IL_6ZCE_0661/A/1272:1276,
1/A/1436:1438		Isolated cWS basepair
geometric
IL_4V88_450
NA
IL_6ZCE_0971/A/1272:1278,
1/A/1430:1438		No text annotation
IL_6ZCE_0671/A/1276:1278,
1/A/1430:1436		Minor groove platform with extra cWW
homologous
IL_4V88_451
NA
IL_6ZCE_0681/A/1280:1281,
1/A/1426:1428		Single bulged A
homologous
IL_4V88_452
NA
IL_6ZCE_0691/A/1290:1292,
1/A/1323:1325		Isolated cWH basepair
homologous
IL_4V88_453
NA
IL_6ZCE_0701/A/1306:1308,
1/A/1317:1318		Minor groove platform
geometric
IL_2QWY_009
IL_51454.3
IL_6ZCE_0711/A/1339:1342,
1/A/1383:1385		Isolated non-canonical cWW pair
homologous
IL_4V88_455
NA
IL_6ZCE_0721/A/1345:1348,
1/A/1377:1380		Minor groove platform
homologous
IL_4V88_456
NA
IL_6ZCE_0731/A/1352:1354,
1/A/1369:1373		Isolated non-canonical cWW pair
homologous
IL_4V88_457
NA
IL_6ZCE_0741/A/1389:1391,
1/A/1407:1412		Major groove platform; stack outside cWW
homologous
IL_4V88_458
NA
IL_6ZCE_0751/A/1480:1487,
1/A/1519:1527		No text annotation
homologous
IL_4V88_459
NA
IL_6ZCE_0761/A/1488:1494,
1/A/1513:1518		180 degree turn
homologous
IL_4V88_460
NA
IL_6ZCE_0771/A/1495:1498,
1/A/1509:1512		Tandem non-canonical cWW pairs
homologous
IL_4V88_461
NA
IL_6ZCE_0781/A/1540:1545,
1/A/1566:1571		No text annotation
homologous
IL_4V88_462
NA
IL_6ZCE_0791/A/1636:1638,
1/A/1764:1767		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_6ZCE_0801/A/1638:1641,
1/A/1760:1764		No text annotation
homologous
IL_8C3A_471
NA
IL_6ZCE_0811/A/1642:1644,
1/A/1757:1759		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_87907.2
IL_6ZCE_0821/A/1644:1647,
1/A/1753:1757		No text annotation
homologous
IL_8CRE_469
IL_11399.2
IL_6ZCE_0831/A/1650:1652,
1/A/1748:1750		Isolated non-canonical cWW pair
homologous
IL_4V88_467
NA
IL_6ZCE_0841/A/1653:1656,
1/A/1744:1747		Double sheared
geometric
IL_4KZD_002
IL_09705.15
IL_6ZCE_0851/A/1656:1658,
1/A/1743:1744		Single bulged U
homologous
IL_4V88_469
NA
IL_6ZCE_0861/A/1665:1667,
1/A/1734:1736		Isolated non-canonical cWW pair
homologous
IL_4V88_470
NA
IL_6ZCE_0871/A/1669:1672,
1/A/1729:1732		Double sheared
homologous
IL_4V88_471
NA
IL_6ZCE_0881/A/1672:1674,
1/A/1727:1729		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_87907.2
IL_6ZCE_0891/A/1675:1678,
1/A/1723:1726		Tandem non-canonical cWW pairs
homologous
IL_4V88_473
NA
IL_6ZCE_0901/A/1678:1682,
1/A/1719:1723		Triple sheared
geometric
IL_4V88_474
NA
IL_6ZCE_1011/A/1688:1690,
1/A/1711:1713		No text annotation

Problematic loops

#loop idProblemSequence
IL_6ZCE_016Isolated tHS basepair with bulges
IL_6ZCE_028Triple non-canonical cWW pairs
IL_6ZCE_092No text annotation
IL_6ZCE_037Tandem non-canonical cWW pairs
IL_6ZCE_093No text annotation
IL_6ZCE_046Tandem non-canonical cWW pairs
IL_6ZCE_052No text annotation
IL_6ZCE_095No text annotation
IL_6ZCE_096No text annotation
IL_6ZCE_098No text annotation
IL_6ZCE_099Isolated near basepair
IL_6ZCE_100Isolated non-canonical cWW pair
IL_6ZCE_091No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6ZCE_0011/A/41:42,
1/A/433:439,
1/A/464:466		No text annotation
geometric
J3_8C3A_082
NA
J3_6ZCE_0141/A/41:48,
1/A/431:439,
1/A/464:466		No text annotation
homologous
J3_8C3A_083
NA
J3_6ZCE_0021/A/633:635,
1/A/861:865,
1/A/965:966		No text annotation
geometric
J3_4V88_080
NA
J3_6ZCE_0151/A/633:635,
1/A/861:866,
1/A/962:966		No text annotation
homologous
J3_8P9A_072
J3_17385.4
J3_6ZCE_0031/A/760:763,
1/A/773:775,
1/A/785:790		No text annotation
homologous
J3_4V88_032
NA
J3_6ZCE_0041/A/881:884,
1/A/928:936,
1/A/943:947		No text annotation
homologous
J3_4V88_033
NA
J3_6ZCE_0051/A/1037:1039,
1/A/1079:1083,
1/A/1090:1094		No text annotation
homologous
J3_4V88_034
NA
J3_6ZCE_0061/A/1161:1164,
1/A/1581:1587,
1/A/1609:1616		No text annotation
J3_6ZCE_0071/A/1168:1171,
1/A/1468:1470,
1/A/1574:1577		No text annotation
homologous
J3_4V88_036
NA
J3_6ZCE_0081/A/1180:1187,
1/A/1198:1209,
1/A/1454:1458		No text annotation
homologous
J3_8C3A_040
NA
J3_6ZCE_0091/A/1215:1220,
1/A/1263:1267,
1/A/1442:1448		No text annotation
homologous
J3_8C3A_041
NA
J3_6ZCE_0101/A/1283:1288,
1/A/1327:1332,
1/A/1419:1424		No text annotation
homologous
J3_4V88_039
NA
J3_6ZCE_0111/A/1293:1294,
1/A/1303:1306,
1/A/1318:1322		No text annotation
homologous
J3_8C3A_085
NA
J3_6ZCE_0121/A/1336:1338,
1/A/1386:1389,
1/A/1412:1415		No text annotation
homologous
J3_8C3A_043
NA
J3_6ZCE_0161/A/1336:1338,
1/A/1386:1391,
1/A/1407:1415		No text annotation
homologous
J3_8C3A_086
NA
J3_6ZCE_0131/A/1470:1474,
1/A/1533:1540,
1/A/1571:1574		No text annotation
homologous
J3_4V88_041
NA
J4_6ZCE_0011/A/99:107,
1/A/307:309,
1/A/357:361,
1/A/383:384		No text annotation
homologous
J4_8C3A_021
NA
J4_6ZCE_0021/A/622:624,
1/A/975:980,
1/A/1021:1032,
1/A/1103:1104		No text annotation
homologous
J4_8P9A_022
J4_61885.6
J5_6ZCE_0011/A/31:35,
1/A/473:479,
1/A/509:516,
1/A/536:546,
1/A/592:595		No text annotation
J5_6ZCE_0021/A/54:57,
1/A/90:97,
1/A/386:388,
1/A/409:411,
1/A/422:426		No text annotation
homologous
J5_8C3A_020
NA
J5_6ZCE_0041/A/636:641,
1/A/693:698,
1/A/740:744,
1/A/807:817,
1/A/854:860		No text annotation

Problematic loops

#loop idProblemSequence
J5_6ZCE_003No text annotation

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