6ZCE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZCE_001 | No text annotation | ||
| HL_6ZCE_002 | No text annotation | ||
| HL_6ZCE_003 | GNRA related | ||
| HL_6ZCE_036 | No text annotation | ||
| HL_6ZCE_004 | No text annotation | ||
| HL_6ZCE_005 | T-loop with 1 bulged base | ||
| HL_6ZCE_006 | Mini UNCG | ||
| HL_6ZCE_007 | GNRA related | ||
| HL_6ZCE_008 | No text annotation | ||
| HL_6ZCE_009 | No text annotation | ||
| HL_6ZCE_010 | UNCG | ||
| HL_6ZCE_011 | No text annotation | ||
| HL_6ZCE_012 | No text annotation | ||
| HL_6ZCE_013 | No text annotation | ||
| HL_6ZCE_014 | GNRA variation | ||
| HL_6ZCE_015 | No text annotation | ||
| HL_6ZCE_016 | No text annotation | ||
| HL_6ZCE_017 | No text annotation | ||
| HL_6ZCE_018 | Pseudoknot geometry | ||
| HL_6ZCE_019 | No text annotation | ||
| HL_6ZCE_020 | GNRA | ||
| HL_6ZCE_021 | No text annotation | ||
| HL_6ZCE_022 | No text annotation | ||
| HL_6ZCE_023 | GNRA | ||
| HL_6ZCE_024 | GNRA | ||
| HL_6ZCE_025 | No text annotation | ||
| HL_6ZCE_026 | Anticodon loop related | ||
| HL_6ZCE_027 | GNRA | ||
| HL_6ZCE_028 | No text annotation | ||
| HL_6ZCE_029 | No text annotation | ||
| HL_6ZCE_030 | GNRA | ||
| HL_6ZCE_031 | GNRA | ||
| HL_6ZCE_037 | No text annotation | ||
| HL_6ZCE_032 | No text annotation | ||
| HL_6ZCE_033 | No text annotation | ||
| HL_6ZCE_034 | No text annotation | ||
| HL_6ZCE_035 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZCE_001 | Single bulged C | ||
| IL_6ZCE_002 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_003 | Triple sheared related | ||
| IL_6ZCE_004 | No text annotation | ||
| IL_6ZCE_005 | Minor groove platform | ||
| IL_6ZCE_006 | No text annotation | ||
| IL_6ZCE_007 | No text annotation | ||
| IL_6ZCE_008 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_009 | Multiple bulged bases | ||
| IL_6ZCE_010 | No text annotation | ||
| IL_6ZCE_011 | tWH-tWH-tHW-tHW | ||
| IL_6ZCE_012 | Isolated cWH basepair | ||
| IL_6ZCE_013 | Double sheared | ||
| IL_6ZCE_014 | Major groove platform with extra cWW | ||
| IL_6ZCE_015 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_016 | Isolated tHS basepair with bulges | ||
| IL_6ZCE_017 | Single bulged A | ||
| IL_6ZCE_018 | No text annotation | ||
| IL_6ZCE_019 | Multiple bulged bases | ||
| IL_6ZCE_020 | Kink-turn with non-sequential stacking | ||
| IL_6ZCE_021 | No text annotation | ||
| IL_6ZCE_022 | No text annotation | ||
| IL_6ZCE_023 | Isolated cWH basepair | ||
| IL_6ZCE_024 | Isolated near basepair | ||
| IL_6ZCE_025 | Single bulged U | ||
| IL_6ZCE_026 | C-loop | ||
| IL_6ZCE_027 | Single bulged G | ||
| IL_6ZCE_102 | Isolated cWH basepair | ||
| IL_6ZCE_028 | Triple non-canonical cWW pairs | ||
| IL_6ZCE_029 | Minor groove platform | ||
| IL_6ZCE_030 | Minor groove platform | ||
| IL_6ZCE_031 | SSU/LSU pseudoknot | ||
| IL_6ZCE_032 | Single bulged U | ||
| IL_6ZCE_033 | Kink-turn related | ||
| IL_6ZCE_034 | No text annotation | ||
| IL_6ZCE_035 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_036 | No text annotation | ||
| IL_6ZCE_092 | No text annotation | ||
| IL_6ZCE_037 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_103 | No text annotation | ||
| IL_6ZCE_038 | No text annotation | ||
| IL_6ZCE_039 | No text annotation | ||
| IL_6ZCE_040 | Major groove minor groove platform; mini C-loop | ||
| IL_6ZCE_041 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_042 | No text annotation | ||
| IL_6ZCE_043 | No text annotation | ||
| IL_6ZCE_044 | Major groove platform; stack outside cWW | ||
| IL_6ZCE_093 | No text annotation | ||
| IL_6ZCE_045 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_094 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_046 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_047 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_048 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_049 | No text annotation | ||
| IL_6ZCE_050 | Other IL | ||
| IL_6ZCE_051 | tSH-tHW-tHS | ||
| IL_6ZCE_104 | No text annotation | ||
| IL_6ZCE_052 | No text annotation | ||
| IL_6ZCE_053 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_054 | Single bulged U | ||
| IL_6ZCE_055 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6ZCE_056 | Single bulged A | ||
| IL_6ZCE_057 | Single bulged G | ||
| IL_6ZCE_058 | C-loop | ||
| IL_6ZCE_059 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_060 | Minor groove platform | ||
| IL_6ZCE_061 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_095 | No text annotation | ||
| IL_6ZCE_096 | No text annotation | ||
| IL_6ZCE_062 | No text annotation | ||
| IL_6ZCE_105 | No text annotation | ||
| IL_6ZCE_063 | No text annotation | ||
| IL_6ZCE_064 | No text annotation | ||
| IL_6ZCE_065 | Single bulged U | ||
| IL_6ZCE_066 | Isolated cWS basepair | ||
| IL_6ZCE_097 | No text annotation | ||
| IL_6ZCE_067 | Minor groove platform with extra cWW | ||
| IL_6ZCE_068 | Single bulged A | ||
| IL_6ZCE_069 | Isolated cWH basepair | ||
| IL_6ZCE_070 | Minor groove platform | ||
| IL_6ZCE_071 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_072 | Minor groove platform | ||
| IL_6ZCE_073 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_098 | No text annotation | ||
| IL_6ZCE_074 | Major groove platform; stack outside cWW | ||
| IL_6ZCE_075 | No text annotation | ||
| IL_6ZCE_076 | 180 degree turn | ||
| IL_6ZCE_077 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_078 | No text annotation | ||
| IL_6ZCE_079 | No text annotation | ||
| IL_6ZCE_080 | No text annotation | ||
| IL_6ZCE_081 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_082 | No text annotation | ||
| IL_6ZCE_083 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_084 | Double sheared | ||
| IL_6ZCE_085 | Single bulged U | ||
| IL_6ZCE_099 | Isolated near basepair | ||
| IL_6ZCE_086 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_087 | Double sheared | ||
| IL_6ZCE_088 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_089 | Tandem non-canonical cWW pairs | ||
| IL_6ZCE_090 | Triple sheared | ||
| IL_6ZCE_100 | Isolated non-canonical cWW pair | ||
| IL_6ZCE_091 | No text annotation | ||
| IL_6ZCE_101 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZCE_001 | No text annotation | ||
| J3_6ZCE_014 | No text annotation | ||
| J3_6ZCE_002 | No text annotation | ||
| J3_6ZCE_015 | No text annotation | ||
| J3_6ZCE_003 | No text annotation | ||
| J3_6ZCE_004 | No text annotation | ||
| J3_6ZCE_005 | No text annotation | ||
| J3_6ZCE_006 | No text annotation | ||
| J3_6ZCE_007 | No text annotation | ||
| J3_6ZCE_008 | No text annotation | ||
| J3_6ZCE_009 | No text annotation | ||
| J3_6ZCE_010 | No text annotation | ||
| J3_6ZCE_011 | No text annotation | ||
| J3_6ZCE_012 | No text annotation | ||
| J3_6ZCE_016 | No text annotation | ||
| J3_6ZCE_013 | No text annotation | ||
| J4_6ZCE_001 | No text annotation | ||
| J4_6ZCE_002 | No text annotation | ||
| J5_6ZCE_001 | No text annotation | ||
| J5_6ZCE_002 | No text annotation | ||
| J5_6ZCE_004 | No text annotation | ||
| J5_6ZCE_003 | No text annotation |
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