HL_6ZCE_016

3D structure

PDB id

6ZCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast ABCE1-bound 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6ZCE|1|A|G|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZCE_016 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1563

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6ZCE|1|A|U|764
6ZCE|1|A|G|765
6ZCE|1|A|U|766
6ZCE|1|A|U|767
6ZCE|1|A|C|768
6ZCE|1|A|A|769
6ZCE|1|A|A|770
6ZCE|1|A|A|771
6ZCE|1|A|G|772

Current chains

Chain A

18S ribosomal RNA (1719-MER)

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain K

40S ribosomal protein S9-A

Chain Z

40S ribosomal protein S24-A