HL_6ZJ3_001
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- G(PSU)GAUAC(OMG)CAGAUCUUGUGAUC
- Length
- 22 nucleotides
- Bulged bases
- 6ZJ3|1|LA|U|83, 6ZJ3|1|LA|U|85
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_001 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.1756
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|LA|G|67
6ZJ3|1|LA|PSU|68
6ZJ3|1|LA|G|69
6ZJ3|1|LA|A|70
6ZJ3|1|LA|U|71
6ZJ3|1|LA|A|72
6ZJ3|1|LA|C|73
6ZJ3|1|LA|OMG|74
6ZJ3|1|LA|C|75
6ZJ3|1|LA|A|76
6ZJ3|1|LA|G|77
6ZJ3|1|LA|A|78
6ZJ3|1|LA|U|80
6ZJ3|1|LA|C|81
6ZJ3|1|LA|U|82
6ZJ3|1|LA|U|83
6ZJ3|1|LA|G|84
6ZJ3|1|LA|U|85
6ZJ3|1|LA|G|86
6ZJ3|1|LA|A|87
6ZJ3|1|LA|U|88
6ZJ3|1|LA|C|89
Current chains
- Chain LA
- 5.8S rRNA
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LC
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ll
- Ribosomal protein uL24
- Chain Lp
- Ribosomal protein uL29
Coloring options: