HL_6ZJ3_002
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CAACUGG
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LA|C|117, 6ZJ3|1|LA|G|119
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_002 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.4967
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
6ZJ3|1|LA|C|114
6ZJ3|1|LA|A|115
6ZJ3|1|LA|A|116
6ZJ3|1|LA|C|117
6ZJ3|1|LA|U|118
6ZJ3|1|LA|G|119
6ZJ3|1|LA|G|120
Current chains
- Chain LA
- 5.8S rRNA
Nearby chains
- Chain L1
- Ribosomal protein eL39
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- LSU rRNA chain 6
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lk
- Ribosomal protein uL23
- Chain Ly
- Ribosomal protein eL37
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