HL_6ZJ3_003

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GUCCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_003 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.16

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|LA|G|131
6ZJ3|1|LA|U|132
6ZJ3|1|LA|C|135
6ZJ3|1|LA|C|136
6ZJ3|1|LA|C|137

Current chains

Chain LA

5.8S rRNA

Nearby chains

Chain LG

LSU rRNA chain 6

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain Lk

Ribosomal protein uL23