HL_6ZJ3_010

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAAAC

Length

5 nucleotides

Bulged bases

6ZJ3|1|LC|A|403, 6ZJ3|1|LC|A|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_010 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1727

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|LC|G|401
6ZJ3|1|LC|A|402
6ZJ3|1|LC|A|403
6ZJ3|1|LC|A|404
6ZJ3|1|LC|C|405

Current chains

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LE

Large subunit ribosomal RNA; LSU rRNA

Chain LR

Ribosomal protein uL4

Chain Ll

Ribosomal protein uL24