HL_6ZJ3_011
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GAGACUGUC
- Length
- 9 nucleotides
- Bulged bases
- 6ZJ3|1|LC|G|411, 6ZJ3|1|LC|A|412, 6ZJ3|1|LC|C|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6ZJ3_011 not in the Motif Atlas
- Geometric match to HL_7A0S_012
- Geometric discrepancy: 0.2385
- The information below is about HL_7A0S_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.4
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 16
Unit IDs
6ZJ3|1|LC|G|409
6ZJ3|1|LC|A|410
6ZJ3|1|LC|G|411
6ZJ3|1|LC|A|412
6ZJ3|1|LC|C|413
6ZJ3|1|LC|U|414
6ZJ3|1|LC|G|415
6ZJ3|1|LC|U|416
6ZJ3|1|LC|C|417
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain LA
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- Ribosomal protein uL4
- Chain Ll
- Ribosomal protein uL24
- Chain Lu
- Ribosomal protein eL32
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