HL_6ZJ3_015

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCGCGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ZJ3_015 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2892

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ZJ3|1|LC|C|586
6ZJ3|1|LC|C|587
6ZJ3|1|LC|G|588
6ZJ3|1|LC|C|589
6ZJ3|1|LC|G|590
6ZJ3|1|LC|A|591
6ZJ3|1|LC|A|592
6ZJ3|1|LC|G|593

Current chains

Chain LC

LSU rRNA chain 2

Nearby chains

Chain LF

Large subunit ribosomal RNA; LSU rRNA

Chain Li

Ribosomal protein uL22